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Hydra Image Processor: 5-D GPU Image Analysis Library with MATLAB and Python Wrappers
Light microscopes can now capture data in five dimensions at very high frame rates producing terabytes of data per experiment. Five dimensional data has three spatial dimensions (x,y,z), multiple channels (λ) and time (t). Current tools are prohibitively time consuming and do not efficiently utilize available hardware. The Hydra Image Processor (HIP) is a new library providing hardware-accelerated image processing accessible from interpreted languages including MATLAB and Python. HIP automatically distributes data/computation across system and video RAM allowing hardware-accelerated processing of arbitrarily large images. HIP also partitions compute tasks optimally across multiple GPUs. HIP includes a new kernel renormalization reducing boundary effects associated with widely-used padding approaches. AVAILABILITY AND IMPLEMENTATION: Hydra Image Processor is free and open source software released under the BSD 3-Clause License. Source code and compiled binary files will be maintained on http://www.hydraimageprocessor.com. A comprehensive description of all MATLAB and Python interfaces and user documents are provided. HIP includes GPU accelerated support for most common image processing operations in 2-D and 3-D and is easily extensible. HIP uses the NVIDIA CUDA interface to access the GPU. CUDA is well supported on Windows and Linux with macOS support in the future. SUPPLEMENTARY INFORMATION: Supplementary data, user documents, and community forums are available at http://hydraimageprocessor.com. The website provides links to each of the relevant github repositories.
pmid: 31240306 Bioinformatics 影响因子: 4.531 发表日期: 20190626 官网 免费下载
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